PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 470633
Common NameARALYDRAFT_470633
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 238aa    MW: 26607.3 Da    PI: 4.7465
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
470633genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.6e-1879129255
     AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
              y+GVr ++ +g+++AeIrd    + k  r++lg+f taeeAa a+++a+ +l+g
  470633  79 SYRGVRKRP-WGKYAAEIRDsT--R-KGIRVWLGTFNTAEEAALAYDQAAFALKG 129
             69*******.**********32..2.24***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.57E-2978139No hitNo description
SuperFamilySSF541711.7E-2279139IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-3079137IPR001471AP2/ERF domain
SMARTSM003802.1E-3879143IPR001471AP2/ERF domain
PROSITE profilePS5103222.82779137IPR001471AP2/ERF domain
PfamPF008475.2E-1379129IPR001471AP2/ERF domain
PRINTSPR003677.7E-118091IPR001471AP2/ERF domain
PRINTSPR003677.7E-11103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009753Biological Processresponse to jasmonic acid
GO:0009861Biological Processjasmonic acid and ethylene-dependent systemic resistance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MEYQNTFLSG EFSPENSSSS SWSSQESFFW EESFLHQSFD QSFLLSSPSY YSDDFFAFES  60
SIIKEEEEAT VAAEEEEKSY RGVRKRPWGK YAAEIRDSTR KGIRVWLGTF NTAEEAALAY  120
DQAAFALKGS LAVLNFPVDV VEESLRKMEN VNLNDGESPV IALKRKHSMR NRPRGKKKSS  180
SSSTLTSSPS SSYSSSSSLS SRGRKQSVVM TQESNTTLVV LEDLGAEYLE ELMRSCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2678140163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00023PBMTransfer from AT1G06160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0110010.0BT011001.1 Arabidopsis thaliana At1g06160 gene, complete cds.
GenBankBT0149580.0BT014958.1 Arabidopsis thaliana At1g06160 gene, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF9P140.0AC025290.3 Sequence of BAC F9P14 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889588.11e-171hypothetical protein ARALYDRAFT_470633
SwissprotQ9LND11e-108ERF94_ARATH; Ethylene-responsive transcription factor ERF094
TrEMBLD7KFB51e-171D7KFB5_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.1__587__AT1G06160.11e-171(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39901859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06160.16e-90octadecanoid-responsive Arabidopsis AP2/ERF 59